For an up to date list of publications, please see Google Scholar.
2022
2021
2020
(27) Lysine–arginine advanced glycation end-product cross-links and the effect on collagen structure: A molecular dynamics study. Nash A, de Leeuw N H, Birch H L. (2018) ACCEPTED: Proteins: Structure, Function and Bioinformatics.
(26) Concurrent comorbidities substantially alter long-term health behaviours and outcomes of headache patients. Anthony Nash, Sarah Goodday, et al. (2020) MedRXiv.
(25) Extraction of CPRD additional clinical data using R. [ver 1; awaiting peer review]. Anthony Nash & M Zameel Cader. (2020) F1000Research. 9:1124
(24) Allosteric communications between domains modulate activity of matrix metalloprotease-1 , Anthony Nash, , , , , (2020) Biophy J 119(2):360-374 Front cover artwork
(23) Common transcriptional signatures of neuropathic pain. Alexandra Pokhilko, Anthony Nash, M Zameel Cader. (2020) PAIN. 161(7): 1542-1554
(22) The Aggregation of Striped Nanoparticles in Mixed Phospholipid Bilayers. Anthony Nash*, Sang-Young Noh*, and Rebecca Notman. (2020) Nanoscale. 8(12): 4868-4881 *Joint first author. Back cover artwork.
2019
(21) A P System Model of Swarming and Aggregation in a Myxobacteria Colony. Nash A and Kalvala S. (2019) Journal of Membrane Computing. 1(2): 103-111
(20) Glucosepane is associated with changes to structure and physical properties of collagen fibrils. Anthony Nash, Maria Notou, Andrea F. Lopez-Clavijo, Laurent Bozec, Nora H. de Leeuw, Helen L. Birch. (2019) Matrix Biology PLUS. 4:100013.
(19) Relative orientation of collagen molecules within a fibril: A homology model for homo sapien type I collagen. Collier T, Nash A, Birch HL, de Leeuw NH (2019) Journal of Biomolecular Structure & Dynamics, 37(2):537-549.
2018
(18) A Molecular Dynamics Studies of Plasticiser Migration in Nitrocellulose Binders. Richards LA, Nash A, Phipps M, de Leeuw NH (2019) New Journal of Chemistry, 42:17420-17428.
(17) Headache and type 2 diabetes association: a US national ambulatory cross-section study. Nash A, Nevado-Holgado AJ, Lovestone S, Cader Z, Webber C. BioRxiv (2018) https://www.biorxiv.org/content/early/2018/06/04/336586
(16) MARDy: Mycology Antifungal Resistance Database. Nash A, Sewell T, Farrer R, Abdolrasouli A, Shelton J, Fisher M, Rhodes J (2018) Bioinformatics, 34(18):3233-3234.
(15) Modelling Water Diffusion in Plasticizers: Development and Optimization of a Force Field for 2,4-Dinitroethylbenzene and 2,4,6-Trinitroethylbenzene. Richards L, Nash A, Willetts A, de Leeuw NH (2018) RSC Advances, 8:6728-5739.
2017
(14) ForceGen: atomic covalent bond constant derivation for Gromacs. Nash A, Collier T, Birch HL, de Leeuw NH. Journal of Molecular Modeling (2017) DOI: 10.1007/s00894-017-3530-6
(13) Effect on the Mechanical Properties of Type I Collagen of Intra-Molecular Lysine-Arginine Derived Advanced Glycation End-Product Cross-linking. Collier T, Nash A, Birch HL, de Leeuw NH. Journal of Biomechanics (2017) DOI: 10.1016/j.jbiomech.2017.11.021
(12) Simulations of CYP51A from Aspergillus fumigatus in model bilayers provides insights into triazole drug resistance. Nash A, Rhodes JL. (2017) Medical Mycology, 56(3):361-373.
(11) Combining nano-physical and computational investigations to understand the nature of “ageing” in dermal collagen. Ahmed T, Nash A, Clark KEN, Ghibaudo M, de Leeuw N, Potter A, Stratton R, Birch HL, Enea Casse R, Bozec L. International Journal of Nanomedicine (2017) 12: 3303–3314
2016
(10) Intra-molecular Lysine-Arginine derived Advanced Glycation End-product cross-linking in Type I collagen: A molecular dynamics simulation study. Collier TA, Nash A, Birch HL, de Leeuw NH. Biophysical Chemistry (2016) 218:42-46
(9) Computational Study of Glucosepane-Water Hydrogen Bond Formation: an Electron Topology and Orbital Analysis. A Nash, J Saßmannshausen, L Bozec, HL Birch, NH de Leeuw. Journal of Biomolecular Structure & Dynamics. (2016) 20:1-11
(8) Mapping Intermolecular Interactions and Active Site Conformations: from Human MMP-1 Crystal Structure to Molecular Dynamics Free Energy Calculations. A Nash, HL Birch, NH de Leeuw. Journal of Biomolecular Structure & Dynamics. (2016) 35:564-573
2015
(7) Preferential Sites for Intramolecular Glucosepane Cross-link Formation in Type I Collagen: A Thermodynamic Study. TA Collier, A Nash, HL Birch, and NH de Leeuw. Matrix Biology (2015) 48:78-88
(6) De novo Design of Transmembrane Helix-Helix Interactions and Measurement of Stability in a Biological Membrane. A Nash, R Notman, and AM Dixon. Biochimica et Biophysica Acta (BBA) – Biomembranes (2015) 1848(5):1248-57.
2014
(5) SSNN, a method for neural network protein secondary structure fitting using circular dichroism data. V Hall, A Nash, and A Rodger. Analytical Methods (2014) 6:6721-26.
2013
(4) Elucidating Protein Secondary Structure with Circular Dichroism and a Neural Network. V Hall, A Nash, E Hines, and A Rodger. Journal of Computational Chemistry (2013) 34(22):2774-86.
(3) Permeation of Polystyrene Nanoparticles across Model Lipid Bilayer Membranes. THF Thake, JR Webb, A Nash, JZ Rappoport, and R Notman. Soft Matter (2013) 9:10265-74.
(2) Effect of The Oncogenic V664E Mutation on Membrane Insertion, Structure, and Sequence-Dependent Interactions of the Neu Transmembrane Domain in Micelles and Model Membranes: An Integrated Biophysical and Simulation Study. AJ Beevers, A Nash, M Salazar-Cancino, DJ Scott, R Notman, and AM Dixon. Biochemistry (2012) 51(12):2558-68.
Books
(1) A Framework Proposition for Cellular Locality of Dictyostelium Modelled in Pi-Calculus. A Nash and S Kalvala. Complex Systems Modelling and Simulation. (2009) ISBN-13: 978-1905986224.
Abstracts
Genome sequencing reveals infection mechanisms for two amphibian-infecting chytrid species. A Nash, T. Sewell, R.A. Farrer, A. Abdolrasouli, J.M.G. Shelton, M.C. Fisher, J.L. Rhodes. Medical Mycology (2018) 56, S1–S159.
Mardy: Mycology Antifungal Resistance Database. R.A. Farrer, A Nash, A. Martel, E. Verbrugghe, A. Abouelleil, R. Ducatelle, J.E. Longcore, T.Y. James, F. Pasmans, M.C. Fisher, C.A. Cuomo.Medical Mycology (2018) 56, S1–S159.
The thermodynamic characterisation of glucosepane cross-linking in the extra cellular matrix: a density functional theory study. A Nash, AF Lopez-Clavijo, T Collier, L Bozec, HL Birch, NH de Leeuw. International Journal of Experimental Pathology (2015) 96(2):A13.
The thermodynamic identification of glucosepane cross-linking in type I collagen-an all atom molecular dynamics study. T Collier, A Nash, AF Lopez-Clavijo, L Bozec, HL Birch, Nora de Leeuw. International Journal of Experimental Pathology (2015) 96(2):A11-A12.
Dr Anthony Nash MRSC: computational chemistry and life sciences 
